Transcript: lnc-SAAL1-3:1

Basic information

LNCipedia transcript ID: lnc-SAAL1-3:1 
LNCipedia gene ID: lnc-SAAL1-3
Ensembl Gene ID: ENSG00000255470
Ensembl Transcript ID: ENST00000527671
Location (hg19): chr11:18161733-18211042
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1027 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527671.1
Alternative gene names: ENSG00000255470.1; RP11-113D6.6; AC090099.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 183.3458 coding 
CPAT coding probability 88.72% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SAAL1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-113D6.6.1-1:1
4.1 lnc-RP11-113D6.6.1-1:1
5.0 lnc-RP11-113D6.6.1-1:1
5.1 lnc-TPH1-4:1
5.2 lnc-SAAL1-3:1