Transcript: lnc-SAMD11-12:3

Basic information

LNCipedia transcript ID: lnc-SAMD11-12:3 
LNCipedia gene ID: lnc-SAMD11-12
Location (hg19): chr1:569076-569756
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 681 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT000094
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 52.862 non-coding 
CPAT coding probability 9.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SAMD11-12:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL669831.1-11:2
4.0 lnc-AL669831.1-11:2
4.1 lnc-AL669831.1-11:2
5.0 lnc-AL669831.1-11:2
5.1 lnc-VAMP3-133:3
5.2 lnc-SAMD11-12:3