Transcript: lnc-SAMD11-13:2

Basic information

LNCipedia transcript ID: lnc-SAMD11-13:2 
LNCipedia gene ID: lnc-SAMD11-13
Location (hg19): chr1:567064-568365
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1302 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA2:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 79.0361 coding 
CPAT coding probability 69.10% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SAMD11-13:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AL669831.1-12:3
4.1 lnc-AL669831.1-12:3
5.0 lnc-AL669831.1-12:3
5.1 lnc-VAMP3-134:2
5.2 lnc-SAMD11-13:2