Transcript: lnc-SAMD11-2:2

Basic information

LNCipedia transcript ID: lnc-SAMD11-2:2 
LNCipedia gene ID: lnc-SAMD11-2
Ensembl Gene ID: ENSG00000229905
Ensembl Transcript ID: ENST00000422528
Location (hg19): chr1:696291-697369
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 456 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000126; ENST00000422528; ENST00000422528.1; RP11-206L10.4-001; OTTHUMT00000006891.1; NONHSAT000116
Alternative gene names: XLOC_000005; linc-SAMD11-7; ENSG00000229905; RP11-206L10.4; ENSG00000229905.1; OTTHUMG00000002408.1; AL669831.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.4783 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAMD11-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL669831.1-3:1
3.1 lnc-AL669831.1-2:1
4.0 lnc-AL669831.1-2:1
4.1 lnc-AL669831.1-2:1
5.0 lnc-AL669831.1-2:1
5.1 lnc-VAMP3-129:1
5.2 lnc-SAMD11-2:2