Transcript: lnc-SAMD14-2:3

Basic information

LNCipedia transcript ID: lnc-SAMD14-2:3 
LNCipedia gene ID: lnc-SAMD14-2
Location (hg19): chr17:48216825-48222517
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 655 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000513579.1; PPP1R9B-003; OTTHUMT00000366735.1
Alternative gene names: ENSG00000108819.9; PPP1R9B; OTTHUMG00000162008.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1026.5477 coding 
CPAT coding probability 96.32% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SAMD14-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SAMD14-2:3
4.0 lnc-SAMD14-2:3
4.1 lnc-SAMD14-2:3
5.0 lnc-SAMD14-2:3
5.1 lnc-LRRC59-10:1
5.2 lnc-SAMD14-2:3