Transcript: lnc-SAMD3-1:2

Basic information

LNCipedia transcript ID: lnc-SAMD3-1:2 
LNCipedia gene ID: lnc-SAMD3-1
Ensembl Gene ID: ENSG00000227678
Ensembl Transcript ID: ENST00000609978
Location (hg19): chr6:130454711-130465515
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 944 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609978.1; ENST00000609978.5
Alternative gene names: ENSG00000227678.3; RP11-73O6.3; ENSG00000227678.7; AL355581.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -206.2016 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAMD3-1:2 no no no no

Available literature

  1. Cao (2016), Microarray profiling of bone marrow long non-coding RNA expression in Chinese pediatric acute myeloid leukemia patients., Oncol. Rep.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SAMD3-1:2
4.0 lnc-SAMD3-1:2
4.1 lnc-SAMD3-1:2
5.0 lnc-SAMD3-1:2
5.1 lnc-HDDC2-51:3
5.2 lnc-SAMD3-1:2