Transcript: lnc-SAMD5-1:10

Basic information

LNCipedia transcript ID: lnc-SAMD5-1:10 
LNCipedia gene ID: lnc-SAMD5-1
Location (hg19): chr6:147708800-147711601
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1477 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000443556; ENST00000443556.1; RP11-361F15.2-001; OTTHUMT00000042603.1; NONHSAT115449
Alternative gene names: ENSG00000225135; RP11-361F15.2; ENSG00000225135.1; OTTHUMG00000015764.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.6729 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAMD5-1:10 yes no no no

Available literature

  1. Gao (2014), Long non-coding RNA deregulation in tongue squamous cell carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STXBP5-1:1
3.1 lnc-STXBP5-1:1
4.0 lnc-STXBP5-1:1
4.1 lnc-STXBP5-1:1
5.0 lnc-STXBP5-1:1
5.1 lnc-ADGB-9:1
5.2 lnc-SAMD5-1:10