Transcript: lnc-SAMD5-2:4

Basic information

LNCipedia transcript ID: lnc-SAMD5-2:4 
LNCipedia gene ID: lnc-SAMD5-2
Location (hg19): chr6:148038904-148100385
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 404 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT115461
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.2932 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAMD5-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SAMD5-2:4
4.0 lnc-SAMD5-2:4
4.1 lnc-SAMD5-2:4
5.0 lnc-SAMD5-2:4
5.1 lnc-ADGB-22:4
5.2 lnc-SAMD5-2:4