Transcript: lnc-SATB2-2:2

Basic information

LNCipedia transcript ID: lnc-SATB2-2:2 
LNCipedia gene ID: lnc-SATB2-2
Ensembl Gene ID: ENSG00000225421
Ensembl Transcript ID: ENST00000637390
Location (hg19): chr2:199357966-199494017
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1692 bp
Exons: 4
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000637390.1
Alternative gene names: ENSG00000225421.2; AC019330.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -43.5437 non-coding 
CPAT coding probability 10.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SATB2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SATB2-2:2
5.0 lnc-SATB2-2:2
5.1 lnc-HSPD1-27:2
5.2 lnc-SATB2-2:2