Transcript: lnc-SC5D-4:3

Basic information

LNCipedia transcript ID: lnc-SC5D-4:3 
LNCipedia gene ID: lnc-SC5D-4
Location (hg19): chr11:121107512-121117760
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1514 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000004080.1|ENCT00000072723.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 24.1029 non-coding 
CPAT coding probability 13.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SC5D-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SC5DL-4:3
5.0 lnc-SC5DL-4:3
5.1 lnc-HINFP-25:3
5.2 lnc-SC5D-4:3