Transcript: lnc-SCAF11-1:2

Basic information

LNCipedia transcript ID: lnc-SCAF11-1:2 
LNCipedia gene ID: lnc-SCAF11-1
Location (hg19): chr12:45912101-46004371
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 365 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000551229.1; RP11-352M15.1-001; OTTHUMT00000404205.1; NONHSAT027828
Alternative gene names: ENSG00000257657.1; RP11-352M15.1; OTTHUMG00000169469.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.4097 non-coding 
CPAT coding probability 1.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCAF11-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCAF11-1:2
4.0 lnc-SCAF11-1:2
4.1 lnc-SCAF11-1:2
5.0 lnc-SCAF11-1:2
5.1 lnc-RPAP3-31:3
5.2 lnc-SCAF11-1:2