Transcript: lnc-SCAPER-3:1

Basic information

LNCipedia transcript ID: lnc-SCAPER-3:1 
LNCipedia gene ID: lnc-SCAPER-3
Location (hg19): chr15:76580109-76603743
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 461 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT047397
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 464.9351 coding 
CPAT coding probability 6.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SCAPER-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCAPER-3:1
4.0 lnc-SCAPER-3:1
4.1 lnc-SCAPER-3:1
5.0 lnc-SCAPER-3:1
5.1 lnc-PEAK1-14:1
5.2 lnc-SCAPER-3:1