Transcript: lnc-SCGB1C2-7:1

Basic information

LNCipedia transcript ID: lnc-SCGB1C2-7:1 
LNCipedia gene ID: lnc-SCGB1C2-7
Location (hg19): chr17:56209-56601
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 309 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025791; NONHSAT144666
Alternative gene names: XLOC_012065; linc-C17orf97-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.182 non-coding 
CPAT coding probability 22.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCGB1C2-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C17orf97-1:1
3.1 lnc-C17orf97-7:1
4.0 lnc-C17orf97-7:1
4.1 lnc-C17orf97-7:1
5.0 lnc-C17orf97-7:1
5.1 lnc-RPA1-66:1
5.2 lnc-SCGB1C2-7:1