Transcript: lnc-SCGB2B2-12:4

Basic information

LNCipedia transcript ID: lnc-SCGB2B2-12:4 
LNCipedia gene ID: lnc-SCGB2B2-12
Location (hg19): chr19:34881791-34884200
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1461 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000040757.1|HBMT00000734730.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 52.99 non-coding 
CPAT coding probability 19.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SCGB2B2-12:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SCGB2B2-12:4
5.0 lnc-SCGB2B2-12:4
5.1 lnc-SCGB2B2-12:4
5.2 lnc-SCGB2B2-12:4