Transcript: lnc-SCGB2B2-130:4

Basic information

LNCipedia transcript ID: lnc-SCGB2B2-130:4 
LNCipedia gene ID: lnc-SCGB2B2-130
Ensembl Gene ID: ENSG00000267024
Ensembl Transcript ID: ENST00000592220
Location (hg19): chr19:34917017-34919178
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 442 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT064298; ENST00000592220.1
Alternative gene names: ENSG00000267024.1; CTD-2588C8.8; AC008747.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -350.2361 non-coding 
CPAT coding probability 2.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCGB2B2-130:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCGB2B2-8:1
4.0 lnc-SCGB2B2-8:1
4.1 lnc-SCGB2B2-8:1
5.0 lnc-SCGB2B2-8:1
5.1 lnc-SCGB2B2-16:4
5.2 lnc-SCGB2B2-130:4