Transcript: lnc-SCN2A-12:8

Basic information

LNCipedia transcript ID: lnc-SCN2A-12:8 
LNCipedia gene ID: lnc-SCN2A-12
Location (hg19): chr2:165701564-165780917
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3174 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233255.1|MICT00000202189.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.4354 non-coding 
CPAT coding probability 1.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCN2A-12:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SCN2A-6:35
5.0 lnc-SCN2A-6:35
5.1 lnc-TBR1-25:22
5.2 lnc-SCN2A-12:8