Transcript: lnc-SCN4A-1:2

Basic information

LNCipedia transcript ID: lnc-SCN4A-1:2 
LNCipedia gene ID: lnc-SCN4A-1
Location (hg19): chr17:62050280-62066781
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 501 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000263489.1|ENST00000577329.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -344.5097 non-coding 
CPAT coding probability 20.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCN4A-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SCN4A-1:2
5.0 lnc-SCN4A-1:2
5.1 lnc-CYB561-24:2
5.2 lnc-SCN4A-1:2