Transcript: lnc-SCN4B-51:2

Basic information

LNCipedia transcript ID: lnc-SCN4B-51:2 
LNCipedia gene ID: lnc-SCN4B-51
Location (hg19): chr11:117886487-117957508
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 304 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000527329.1; RP11-652L8.2-001; OTTHUMT00000392323.1; NONHSAT024434; ENST00000527329.5
Alternative gene names: ENSG00000255274.3; RP11-652L8.2; OTTHUMG00000166993.1; ENSG00000255274.4; TMPRSS4-AS1; ENSG00000255274.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.5811 non-coding 
CPAT coding probability 10.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCN4B-51:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCN4B-1:1
4.0 TMPRSS4-AS1:2
4.1 TMPRSS4-AS1:2
5.0 TMPRSS4-AS1:2
5.1 lnc-SCN4B-7:2
5.2 lnc-SCN4B-51:2