Transcript: lnc-SCP2D1-1:4

Basic information

LNCipedia transcript ID: lnc-SCP2D1-1:4 
LNCipedia gene ID: lnc-SCP2D1-1
Location (hg19): chr20:18774722-18776431
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1286 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000273148.1|FTMT27900002359.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 0.7537 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SCP2D1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C20orf79-1:6
5.0 lnc-C20orf79-1:6
5.1 lnc-CFAP61-13:4
5.2 lnc-SCP2D1-1:4