Transcript: lnc-SCRN1-1:2

Basic information

LNCipedia transcript ID: lnc-SCRN1-1:2 
LNCipedia gene ID: lnc-SCRN1-1
Location (hg19): chr7:29690659-29724754
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 663 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000426767.1; AC007255.7-002; OTTHUMT00000327679.1
Alternative gene names: ENSG00000225264.2; AC007255.7; OTTHUMG00000152751.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 76.0771 coding 
CPAT coding probability 37.08% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SCRN1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCRN1-1:2
4.0 lnc-SCRN1-1:2
4.1 lnc-SCRN1-1:2
5.0 lnc-SCRN1-1:2
5.1 lnc-PDE1C-25:5
5.2 lnc-SCRN1-1:2