Transcript: lnc-SDK1-2:1

Basic information

LNCipedia transcript ID: lnc-SDK1-2:1 
LNCipedia gene ID: lnc-SDK1-2
Location (hg19): chr7:4473994-4518319
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2689 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013326; NONHSAT118862
Alternative gene names: XLOC_005972; linc-FOXK1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.6239 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SDK1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXK1-1:1
3.1 lnc-FOXK1-1:1
4.0 lnc-FOXK1-1:1
4.1 lnc-FOXK1-1:1
5.0 lnc-FOXK1-1:1
5.1 lnc-RBAK-RBAKDN-4:1
5.2 lnc-SDK1-2:1