Transcript: lnc-SDSL-6:2

Basic information

LNCipedia transcript ID: lnc-SDSL-6:2 
LNCipedia gene ID: lnc-SDSL-6
Location (hg19): chr12:114514951-114532989
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1171 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020569; NONHSAT030866
Alternative gene names: XLOC_009888; linc-MAP1LC3B2-10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.3083 non-coding 
CPAT coding probability 3.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SDSL-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SDSL-4:2
3.1 lnc-SDSL-6:2
4.0 lnc-SDSL-6:2
4.1 lnc-SDSL-6:2
5.0 lnc-SDSL-6:2
5.1 lnc-PLBD2-11:3
5.2 lnc-SDSL-6:2