Transcript: lnc-SEC24B-1:1

Basic information

LNCipedia transcript ID: lnc-SEC24B-1:1 
LNCipedia gene ID: lnc-SEC24B-1
Ensembl Gene ID: ENSG00000246774
Ensembl Transcript ID: ENST00000500526
Location (hg19): chr4:110224191-110237291
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1951 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500526; TCONS_00007592; ENST00000500526.1; AC004051.2-001; OTTHUMT00000363573.1
Alternative gene names: ENSG00000246774; XLOC_003642; linc-SEC24B-1; AC004051.2; ENSG00000246774.1; OTTHUMG00000161047.1; ZCCHC23


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.0035 non-coding 
CPAT coding probability 17.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEC24B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEC24B-1:1
3.1 lnc-SEC24B-1:1
4.0 lnc-SEC24B-1:1
4.1 lnc-SEC24B-1:1
5.0 lnc-SEC24B-1:1
5.1 lnc-GAR1-7:2
5.2 lnc-SEC24B-1:1