Transcript: lnc-SEC24C-5:3

Basic information

LNCipedia transcript ID: lnc-SEC24C-5:3 
LNCipedia gene ID: lnc-SEC24C-5
Ensembl Gene ID: ENSG00000268584
Ensembl Transcript ID: ENST00000595595
Location (hg19): chr10:75385754-75386548
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 795 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT139982; ENST00000595595.1
Alternative gene names: ENSG00000268584.1; RP11-464F9.20; AC073389.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.8601 non-coding 
CPAT coding probability 13.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEC24C-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC24C-5:3
4.0 lnc-SEC24C-5:3
4.1 lnc-SEC24C-5:3
5.0 lnc-SEC24C-5:3
5.1 lnc-MTRNR2L5-165:3
5.2 lnc-SEC24C-5:3