Transcript: lnc-SEC61G-1:2

Basic information

LNCipedia transcript ID: lnc-SEC61G-1:2 
LNCipedia gene ID: lnc-SEC61G-1
Location (hg19): chr7:54874172-54879694
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 615 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000095923.1|HBMT00001338811.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -70.1839 non-coding 
CPAT coding probability 18.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEC61G-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SEC61G-1:2
5.0 lnc-SEC61G-1:2
5.1 lnc-VOPP1-1:3
5.2 lnc-SEC61G-1:2