Transcript: lnc-SEC61G-3:1

Basic information

LNCipedia transcript ID: lnc-SEC61G-3:1 
LNCipedia gene ID: lnc-SEC61G-3
Ensembl Gene ID: ENSG00000238131
Ensembl Transcript ID: ENST00000418679
Location (hg19): chr7:53994369-54015437
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 625 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013175; ENST00000418679; ENST00000418679.1; RP11-806J6.1-001; OTTHUMT00000342821.1; NONHSAT120645
Alternative gene names: XLOC_006448; linc-COBL-1; ENSG00000238131; RP11-806J6.1; ENSG00000238131.1; OTTHUMG00000156041.1; AC073521.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -207.3564 non-coding 
CPAT coding probability 10.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEC61G-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEC61G-3:1
3.1 lnc-SEC61G-3:1
4.0 lnc-SEC61G-3:1
4.1 lnc-SEC61G-3:1
5.0 lnc-SEC61G-3:1
5.1 lnc-VOPP1-16:1
5.2 lnc-SEC61G-3:1