Transcript: lnc-SEC61G-5:1

Basic information

LNCipedia transcript ID: lnc-SEC61G-5:1 
LNCipedia gene ID: lnc-SEC61G-5
Ensembl Gene ID: ENSG00000228627
Ensembl Transcript ID: ENST00000412800
Location (hg19): chr7:53626907-53635942
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 437 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013173; ENST00000412800; ENST00000412800.1; GS1-278J22.2-001; OTTHUMT00000342818.1; NONHSAT120638
Alternative gene names: XLOC_006446; linc-COBL-5; ENSG00000228627; GS1-278J22.2; ENSG00000228627.1; OTTHUMG00000156038.1; AC009468.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.0162 non-coding 
CPAT coding probability 0.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEC61G-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEC61G-5:1
3.1 lnc-SEC61G-5:1
4.0 lnc-SEC61G-5:1
4.1 lnc-SEC61G-5:1
5.0 lnc-SEC61G-5:1
5.1 lnc-VOPP1-17:1
5.2 lnc-SEC61G-5:1