Transcript: lnc-SEC61G-6:1

Basic information

LNCipedia transcript ID: lnc-SEC61G-6:1 
LNCipedia gene ID: lnc-SEC61G-6
Ensembl Gene ID: ENSG00000234105
Ensembl Transcript ID: ENST00000457372
Location (hg19): chr7:53582685-53584809
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 366 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013172; ENST00000457372; ENST00000457372.1; GS1-278J22.1-001; OTTHUMT00000342823.1; NONHSAT120637
Alternative gene names: XLOC_006445; linc-COBL-4; ENSG00000234105; GS1-278J22.1; ENSG00000234105.1; OTTHUMG00000156043.1; AC009468.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.7071 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEC61G-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEC61G-6:1
3.1 lnc-SEC61G-6:1
4.0 lnc-SEC61G-6:1
4.1 lnc-SEC61G-6:1
5.0 lnc-SEC61G-6:1
5.1 lnc-VOPP1-18:1
5.2 lnc-SEC61G-6:1