Transcript: lnc-SELENOF-2:11

Basic information

LNCipedia transcript ID: lnc-SELENOF-2:11 
LNCipedia gene ID: lnc-SELENOF-2
Ensembl Gene ID: ENSG00000236915
Ensembl Transcript ID: ENST00000456587
Location (hg19): chr1:87036864-87158886
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 522 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456587.1; RP4-651E10.4-001; OTTHUMT00000028263.1; NONHSAT004271
Alternative gene names: ENSG00000236915.1; RP4-651E10.4; OTTHUMG00000010247.1; AL356270.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -243.7477 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SELENOF-2:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP4-604K5.1.1-3:1
4.0 lnc-RP4-604K5.1.1-3:1
4.1 lnc-RP4-604K5.1.1-2:14
5.0 lnc-RP4-604K5.1.1-2:14
5.1 lnc-RBMXL1-27:11
5.2 lnc-SELENOF-2:11