Transcript: lnc-SELENOI-1:5

Basic information

LNCipedia transcript ID: lnc-SELENOI-1:5 
LNCipedia gene ID: lnc-SELENOI-1
Location (hg19): chr2:26521843-26529390
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7548 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000042175.1|HBMT00000760533.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 35.3089 non-coding 
CPAT coding probability 8.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SELENOI-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-EPT1-1:7
5.0 lnc-EPT1-1:7
5.1 lnc-SNX17-30:8
5.2 lnc-SELENOI-1:5