Transcript: lnc-SEMA3B-1:3

Basic information

LNCipedia transcript ID: lnc-SEMA3B-1:3 
LNCipedia gene ID: lnc-SEMA3B-1
Ensembl Gene ID: ENSG00000230454
Ensembl Transcript ID: ENST00000453717
Location (hg19): chr3:50297846-50298839
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 425 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453717; ENST00000453717.1; U73166.2-003; OTTHUMT00000346670.1; NONHSAT089808
Alternative gene names: ENSG00000230454; U73166.2; ENSG00000230454.1; OTTHUMG00000156937.1; U73166.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.721 non-coding 
CPAT coding probability 15.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEMA3B-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GNAI2-1:2
3.1 lnc-GNAI2-1:2
4.0 lnc-GNAI2-1:2
4.1 lnc-C3orf45-1:5
5.0 lnc-C3orf45-1:5
5.1 lnc-GNAI2-1:27
5.2 lnc-SEMA3B-1:3