Transcript: lnc-SEMA4D-2:1

Basic information

LNCipedia transcript ID: lnc-SEMA4D-2:1 
LNCipedia gene ID: lnc-SEMA4D-2
Ensembl Gene ID: ENSG00000224945
Ensembl Transcript ID: ENST00000429700
Location (hg19): chr9:91703802-91724849
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 585 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429700.1; RP11-82L18.2-001; OTTHUMT00000052983.1; NONHSAT132947
Alternative gene names: ENSG00000224945.1; RP11-82L18.2; OTTHUMG00000020177.1; AL353150.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.4972 non-coding 
CPAT coding probability 7.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEMA4D-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEMA4D-2:1
4.0 lnc-SEMA4D-2:1
4.1 lnc-SEMA4D-2:1
5.0 lnc-SEMA4D-2:1
5.1 lnc-SEMA4D-2:1
5.2 lnc-SEMA4D-2:1