Transcript: lnc-SEMA4D-3:1

Basic information

LNCipedia transcript ID: lnc-SEMA4D-3:1 
LNCipedia gene ID: lnc-SEMA4D-3
Ensembl Gene ID: ENSG00000236507
Ensembl Transcript ID: ENST00000442086
Location (hg19): chr9:92503174-92504508
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 928 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015841; ENST00000442086; ENST00000442086.1; RP5-1050E16.1-001; OTTHUMT00000144685.1; NONHSAT132981
Alternative gene names: XLOC_007768; linc-SEMA4D-2; ENSG00000236507; RP5-1050E16.1; ENSG00000236507.1; OTTHUMG00000067507.1; BX470209.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.249 non-coding 
CPAT coding probability 22.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEMA4D-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEMA4D-2:1
3.1 lnc-SEMA4D-3:1
4.0 lnc-SEMA4D-3:1
4.1 lnc-SEMA4D-3:1
5.0 lnc-SEMA4D-3:1
5.1 lnc-SEMA4D-3:1
5.2 lnc-SEMA4D-3:1