Transcript: lnc-SEMA5A-12:1

Basic information

LNCipedia transcript ID: lnc-SEMA5A-12:1 
LNCipedia gene ID: lnc-SEMA5A-12
Location (hg19): chr5:8888427-8893670
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1114 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_2872_chr5:8888426-8893670_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.2292 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEMA5A-12:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEMA5A-4:1
4.0 lnc-SEMA5A-4:1
4.1 lnc-SEMA5A-4:1
5.0 lnc-SEMA5A-4:1
5.1 lnc-IRX2-99:1
5.2 lnc-SEMA5A-12:1