Transcript: lnc-SEPT7-1:6

Basic information

LNCipedia transcript ID: lnc-SEPT7-1:6 
LNCipedia gene ID: lnc-SEPT7-1
Location (hg19): chr7:35756286-35759309
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1083 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00012876; ENST00000458087; ENST00000458087.1; AC018647.3-002; OTTHUMT00000338271.1
Alternative gene names: XLOC_006043; linc-SEPT7-1; ENSG00000227544; AC018647.3; ENSG00000227544.1; OTTHUMG00000155058.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.4354 non-coding 
CPAT coding probability 1.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEPT7-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEPT7-1:6
3.1 lnc-SEPT7-1:6
4.0 lnc-SEPT7-1:6
4.1 lnc-SEPT7-1:6
5.0 lnc-SEPT7-1:6
5.1 lnc-CCDC129-44:18
5.2 lnc-SEPT7-1:6