Transcript: lnc-SEPT9-3:4

Basic information

LNCipedia transcript ID: lnc-SEPT9-3:4 
LNCipedia gene ID: lnc-SEPT9-3
Location (hg19): chr17:75554224-75559074
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4482 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute
Alternative transcript names: ENST00000510484; TCONS_00025200
Alternative gene names: ENSG00000249845; XLOC_012317; linc-TNRC6C-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.3359 non-coding 
CPAT coding probability 4.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEPT9-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEPT9-3:4
3.1 lnc-SEPT9-3:4
4.0 lnc-SEPT9-3:4
4.1 lnc-SEPT9-3:4
5.0 lnc-SEPT9-3:4
5.1 lnc-ZACN-32:12
5.2 lnc-SEPT9-3:4