Transcript: lnc-SEPT9-3:5

Basic information

LNCipedia transcript ID: lnc-SEPT9-3:5 
LNCipedia gene ID: lnc-SEPT9-3
Ensembl Gene ID: ENSG00000267506
Ensembl Transcript ID: ENST00000591283
Location (hg19): chr17:75554224-75559325
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4902 bp
Exons: 3
Sources: Broad Institute; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025130; ENST00000591283.1
Alternative gene names: XLOC_012317; linc-TNRC6C-3; ENSG00000267506.1; RP11-13K12.1; ENSG00000267506.5; AC021683.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.1513 non-coding 
CPAT coding probability 4.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEPT9-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEPT9-3:5
3.1 lnc-SEPT9-3:5
4.0 lnc-SEPT9-3:5
4.1 lnc-SEPT9-3:5
5.0 lnc-SEPT9-3:5
5.1 lnc-ZACN-32:13
5.2 lnc-SEPT9-3:5