Transcript: lnc-SERAC1-15:1

Basic information

LNCipedia transcript ID: lnc-SERAC1-15:1 
LNCipedia gene ID: lnc-SERAC1-15
Location (hg19): chr6:158187915-158189539
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1625 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000090647.1|FTMT22200011278.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -77.2614 non-coding 
CPAT coding probability 11.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERAC1-15:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SERAC1-15:1
5.0 lnc-SERAC1-15:1
5.1 lnc-DYNLT1-15:1
5.2 lnc-SERAC1-15:1