Transcript: lnc-SERAC1-1:1

Basic information

LNCipedia transcript ID: lnc-SERAC1-1:1 
LNCipedia gene ID: lnc-SERAC1-1
Ensembl Gene ID: ENSG00000236324
Ensembl Transcript ID: ENST00000446768
Location (hg19): chr6:158306146-158313818
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 372 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446768.1; RP3-403L10.3-001; OTTHUMT00000042849.1; NONHSAT115725
Alternative gene names: ENSG00000236324.1; RP3-403L10.3; OTTHUMG00000015900.1; AL035634.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.2723 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERAC1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SERAC1-1:1
4.0 lnc-SERAC1-1:1
4.1 lnc-SERAC1-1:1
5.0 lnc-SERAC1-1:1
5.1 lnc-DYNLT1-5:3
5.2 lnc-SERAC1-1:1