Transcript: lnc-SERF1A-2:5

Basic information

LNCipedia transcript ID: lnc-SERF1A-2:5 
LNCipedia gene ID: lnc-SERF1A-2
Location (hg19): chr5:70091604-70151265
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2158 bp
Exons: 3
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1090:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.1882 non-coding 
CPAT coding probability 25.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERF1A-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SERF1A-2:5
4.1 lnc-SERF1A-2:5
5.0 lnc-SERF1A-2:5
5.1 lnc-BDP1-13:5
5.2 lnc-SERF1A-2:5