Transcript: lnc-SERF1B-1:1

Basic information

LNCipedia transcript ID: lnc-SERF1B-1:1 
LNCipedia gene ID: lnc-SERF1B-1
Location (hg19): chr5:69274357-69293139
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 689 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000512319.1; RP11-974F13.6-001; OTTHUMT00000369090.1; NONHSAT101947
Alternative gene names: ENSG00000250763.1; RP11-974F13.6; OTTHUMG00000162476.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.9811 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERF1B-1:1 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SERF1B-1:1
4.0 lnc-SERF1B-1:1
4.1 lnc-SERF1B-1:1
5.0 lnc-SERF1B-1:1
5.1 lnc-BDP1-22:8
5.2 lnc-SERF1B-1:1