Transcript: lnc-SERF1B-1:9

Basic information

LNCipedia transcript ID: lnc-SERF1B-1:9 
LNCipedia gene ID: lnc-SERF1B-1
Location (hg19): chr5:69216555-69271679
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 255 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1089:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -46.4843 non-coding 
CPAT coding probability 27.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERF1B-1:9 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SERF1B-1:9
4.1 lnc-SERF1B-1:9
5.0 lnc-SERF1B-1:9
5.1 lnc-BDP1-22:7
5.2 lnc-SERF1B-1:9