Transcript: lnc-SERINC3-29:10

Basic information

LNCipedia transcript ID: lnc-SERINC3-29:10 
LNCipedia gene ID: lnc-SERINC3-29
Location (hg19): chr20:43077417-43078732
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 411 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: TCONS_00028047; ENST00000415299.1; RP5-1013A22.2-001; OTTHUMT00000079368.2
Alternative gene names: XLOC_013749; linc-FITM2; ENSG00000237907.1; RP5-1013A22.2; OTTHUMG00000032534.2; LINC01430;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -357.2667 non-coding 
CPAT coding probability 5.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERINC3-29:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf62-1:2
3.1 lnc-C20orf62-1:2
4.0 LINC01430:4
4.1 LINC01430:4
5.0 LINC01430:4
5.1 lnc-MATN4-29:10
5.2 lnc-SERINC3-29:10