Transcript: lnc-SERINC3-29:4

Basic information

LNCipedia transcript ID: lnc-SERINC3-29:4 
HGNC Gene Symbol: lnc-SERINC3-29    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1620
Ensembl Gene ID: ENSG00000168746
Ensembl Transcript ID: ENST00000306731
Location (hg19): chr20:43080624-43093968
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 413 bp
Exons: 3
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000306731.4
Alternative gene names: ENSG00000168746.8; LINC01620;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -298.0576 non-coding 
CPAT coding probability 5.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERINC3-29:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01430:7
5.0 LINC01430:7
5.1 lnc-MATN4-29:4
5.2 lnc-SERINC3-29:4