Transcript: lnc-SERPINB6-1:2

Basic information

LNCipedia transcript ID: lnc-SERPINB6-1:2 
LNCipedia gene ID: lnc-SERPINB6-1
Location (hg19): chr6:2989960-2998977
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 413 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000456189.1; RP1-90J20.8-001; OTTHUMT00000039648.1
Alternative gene names: ENSG00000224846.1; RP1-90J20.8; OTTHUMG00000014129.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.2475 non-coding 
CPAT coding probability 3.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERPINB6-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SERPINB6-1:2
4.0 lnc-SERPINB6-1:2
4.1 lnc-SERPINB6-1:2
5.0 lnc-SERPINB6-1:2
5.1 lnc-ECI2-87:12
5.2 lnc-SERPINB6-1:2