Transcript: lnc-SERPINB9-1:2

Basic information

LNCipedia transcript ID: lnc-SERPINB9-1:2 
LNCipedia gene ID: lnc-SERPINB9-1
Location (hg19): chr6:2854891-2876744
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1588 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000420981; ENST00000420981.1; RP11-420G6.4-001; OTTHUMT00000039645.1; NONHSAT106801
Alternative gene names: ENSG00000230438; RP11-420G6.4; ENSG00000230438.3; OTTHUMG00000014127.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.4026 non-coding 
CPAT coding probability 9.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERPINB9-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SERPINB9-1:1
3.1 lnc-SERPINB9-1:2
4.0 lnc-SERPINB9-1:2
4.1 lnc-SERPINB9-1:2
5.0 lnc-SERPINB9-1:2
5.1 lnc-ECI2-97:4
5.2 lnc-SERPINB9-1:2