Transcript: lnc-SERPINB9-1:5

Basic information

LNCipedia transcript ID: lnc-SERPINB9-1:5 
LNCipedia gene ID: lnc-SERPINB9-1
Ensembl Gene ID: ENSG00000230438
Ensembl Transcript ID: ENST00000420981
Location (hg19): chr6:2855160-2876744
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 983 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420981.2
Alternative gene names: ENSG00000230438.5; RP11-420G6.4; ENSG00000230438.6; SERPINB9P1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.1736 non-coding 
CPAT coding probability 9.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERPINB9-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SERPINB9-1:5
4.0 lnc-SERPINB9-1:5
4.1 lnc-SERPINB9-1:5
5.0 lnc-SERPINB9-1:5
5.1 lnc-ECI2-97:7
5.2 lnc-SERPINB9-1:5