Transcript: lnc-SERPIND1-1:47

Basic information

LNCipedia transcript ID: lnc-SERPIND1-1:47 
LNCipedia gene ID: lnc-SERPIND1-1
Location (hg19): chr22:21057209-21058894
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 788 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000452055; ENST00000452055.1; TMEM191A-004; OTTHUMT00000316652.1; NONHSAT083584; ENST00000452055.5
Alternative gene names: ENSG00000226287; TMEM191A; ENSG00000226287.3; OTTHUMG00000150164.2; ENSG00000226287.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 73.2047 coding 
CPAT coding probability 17.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SERPIND1-1:47 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POM121L4P-1:7
3.1 lnc-POM121L4P-1:7
4.0 lnc-POM121L4P-1:7
4.1 lnc-POM121L4P-1:7
5.0 lnc-POM121L4P-1:7
5.1 lnc-SERPIND1-1:16
5.2 lnc-SERPIND1-1:47