Transcript: lnc-SERPINI1-2:1

Basic information

LNCipedia transcript ID: lnc-SERPINI1-2:1 
LNCipedia gene ID: lnc-SERPINI1-2
Location (hg19): chr3:167582561-167594705
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 457 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: TCONS_00005645; ENST00000463642; ENST00000463642.1; RP11-298O21.6-001; OTTHUMT00000351184.1; NONHSAT093106
Alternative gene names: XLOC_002906; linc-MYNN-7; ENSG00000242924; RP11-298O21.6; ENSG00000242924.1; OTTHUMG00000158502.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -242.072 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERPINI1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SERPINI1-2:1
3.1 lnc-SERPINI1-2:1
4.0 lnc-SERPINI1-2:1
4.1 lnc-SERPINI1-2:1
5.0 lnc-SERPINI1-2:1
5.1 lnc-LRRIQ4-41:1
5.2 lnc-SERPINI1-2:1