Transcript: lnc-SETD6-1:4

Basic information

LNCipedia transcript ID: lnc-SETD6-1:4 
LNCipedia gene ID: lnc-SETD6-1
Location (hg19): chr16:58789878-58802841
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 388 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT142877
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.913 non-coding 
CPAT coding probability 5.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SETD6-1:4 no no no no

Available literature

  1. Jin (2011), Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk., Carcinogenesis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SETD6-1:4
4.0 lnc-SETD6-1:4
4.1 lnc-SETD6-1:4
5.0 lnc-SETD6-1:4
5.1 lnc-ADGRG1-61:4
5.2 lnc-SETD6-1:4